STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2176PFAM: amino acid-binding ACT domain protein; KEGG: sse:Ssed_2431 amino acid-binding ACT domain protein. (179 aa)    
Predicted Functional Partners:
Swoo_2175
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: spl:Spea_1978 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
    0.791
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.622
Swoo_3169
PFAM: amino acid-binding ACT domain protein; KEGG: sse:Ssed_1500 amino acid-binding ACT domain protein.
  
     0.574
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
  
 0.534
Swoo_1240
PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: sse:Ssed_1145 positive regulator of sigma E, RseC/MucC.
  
   
 0.506
Swoo_1252
PFAM: cytochrome c assembly protein; KEGG: sse:Ssed_1157 cytochrome c assembly protein.
  
    0.484
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.482
bamC
NlpBDapX family lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
    0.478
smg
PFAM: protein of unknown function DUF494; KEGG: sse:Ssed_0038 protein of unknown function DUF494; Belongs to the Smg family.
  
    0.472
Swoo_0317
KEGG: sse:Ssed_0429 signaling modulator of AmpD, AmpE.
  
     0.472
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.