Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2186PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_2420 alpha/beta hydrolase fold. (276 aa)    
Predicted Functional Partners:
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
   
   0.702
Swoo_2187
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: sse:Ssed_2419 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin.
  
    0.689
Swoo_2189
PFAM: arsenate reductase and related; KEGG: sse:Ssed_2417 hypothetical protein; Belongs to the ArsC family.
       0.682
Swoo_1970
PFAM: alpha/beta hydrolase fold; KEGG: pmy:Pmen_2705 alpha/beta hydrolase fold.
  
   
 0.595
Swoo_3756
PFAM: alpha/beta hydrolase fold; KEGG: sfr:Sfri_3950 alpha/beta hydrolase fold.
  
     0.543
Swoo_2185
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.466
Swoo_1012
Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.411
Swoo_1033
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sse:Ssed_0984 acyl-CoA dehydrogenase domain protein.
    
  0.408
Swoo_1504
PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: spl:Spea_1234 protein of unknown function DUF1974.
    
  0.408
Swoo_1916
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sse:Ssed_2696 acyl-CoA dehydrogenase domain protein.
    
  0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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