STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2201Glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; Glucodextranase N; KEGG: slo:Shew_1873 glucan 1,4-alpha-glucosidase. (840 aa)    
Predicted Functional Partners:
Swoo_2210
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sfr:Sfri_1788 alpha amylase, catalytic region.
    
 0.915
Swoo_2202
PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_1925 major facilitator superfamily MFS_1.
 
  
 0.724
Swoo_1306
PFAM: tryptophan halogenase; KEGG: sdn:Sden_2707 tryptophan halogenase.
 
     0.623
Swoo_1305
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2708 TonB-dependent receptor.
  
     0.569
Swoo_3837
PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase.
 
     0.568
Swoo_4589
PFAM: TPR repeat-containing protein; KEGG: sbl:Sbal_0349 tetratricopeptide TPR_2 repeat protein.
  
     0.557
Swoo_1032
PFAM: MltA-interacting MipA family protein; KEGG: sse:Ssed_0983 MltA-interacting MipA family protein.
  
     0.544
Swoo_3938
PFAM: tryptophan halogenase; KEGG: ccr:CC_0971 tryptophan halogenase, putative.
 
     0.544
Swoo_2208
PFAM: tryptophan halogenase; KEGG: sfr:Sfri_1786 tryptophan halogenase.
 
     0.537
Swoo_1140
Tryptophan halogenase; PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sbl:Sbal_1121 tryptophan halogenase.
 
     0.531
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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