STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2206PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: slo:Shew_1886 alpha amylase, catalytic region. (668 aa)    
Predicted Functional Partners:
Swoo_2207
PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; SMART: alpha amylase catalytic sub domain; KEGG: shm:Shewmr7_2211 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
     0.846
Swoo_2208
PFAM: tryptophan halogenase; KEGG: sfr:Sfri_1786 tryptophan halogenase.
 
  
 0.768
Swoo_3287
PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: sse:Ssed_3167 PTS system, glucose-like IIB subunint.
  
  
 0.716
Swoo_2209
TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2029 TonB-dependent receptor.
 
     0.597
Swoo_0244
PFAM: amino acid permease-associated region; KEGG: slo:Shew_3597 amino acid permease-associated region.
    
 0.567
Swoo_2100
TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: hch:HCH_06322 amino acid transporters.
    
 0.567
Swoo_2346
PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: spl:Spea_2206 amino acid permease-associated region.
    
 0.567
Swoo_1174
KEGG: spl:Spea_0980 hypothetical protein.
  
     0.555
Swoo_2202
PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_1925 major facilitator superfamily MFS_1.
 
  
 0.502
Swoo_0364
PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_1706 conserved hypothetical protein-signal peptide and transmembrane prediction.
  
   
 0.478
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.