Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_2221KEGG: sse:Ssed_3817 hypothetical protein. (486 aa)    
Predicted Functional Partners:
Swoo_2220
KEGG: son:SO_2101 lipoprotein, putative.
 
     0.959
Swoo_2219
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: shm:Shewmr7_2154 redoxin domain protein.
 
     0.899
Swoo_3407
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
   
 0.659
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.574
Swoo_1202
KEGG: sse:Ssed_1094 hypothetical protein.
  
    0.545
Swoo_2222
KEGG: sse:Ssed_2376 transposase and inactivated derivative.
       0.539
Swoo_0379
KEGG: sse:Ssed_4221 hypothetical protein.
  
 
   0.529
Swoo_4829
KEGG: sse:Ssed_4436 hypothetical protein.
  
     0.529
Swoo_2553
PFAM: Rhomboid family protein; KEGG: sse:Ssed_2047 rhomboid family protein.
  
     0.452
Swoo_2904
KEGG: sse:Ssed_1693 hypothetical protein.
 
     0.449
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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