STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2222KEGG: sse:Ssed_2376 transposase and inactivated derivative. (162 aa)    
Predicted Functional Partners:
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
 
     0.696
Swoo_0779
KEGG: sse:Ssed_3804 hypothetical protein.
  
     0.608
Swoo_0552
KEGG: sse:Ssed_4085 hypothetical protein.
  
     0.594
Swoo_1549
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pin:Ping_2637 methyltransferase type 12.
  
     0.562
Swoo_2219
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: shm:Shewmr7_2154 redoxin domain protein.
       0.539
Swoo_2220
KEGG: son:SO_2101 lipoprotein, putative.
       0.539
Swoo_2221
KEGG: sse:Ssed_3817 hypothetical protein.
       0.539
Swoo_4489
KEGG: sse:Ssed_0473 hypothetical protein.
  
     0.524
Swoo_1424
KEGG: sse:Ssed_3201 transcriptional regulator, putative.
 
  
 0.486
Swoo_3444
KEGG: spl:Spea_1582 conserved hypothetical protein.
  
     0.481
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.