Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2228PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sse:Ssed_2357 peptidase S9, prolyl oligopeptidase active site domain protein. (684 aa)    
Predicted Functional Partners:
Swoo_4208
KEGG: sse:Ssed_0761 hypothetical protein.
  
     0.698
Swoo_3877
Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.694
Swoo_4754
PFAM: peptidase M14 carboxypeptidase A; KEGG: sse:Ssed_4365 conserved hypothetical carboxypeptidase.
  
     0.491
Swoo_2229
KEGG: sse:Ssed_2356 membrane protein-like protein.
       0.484
Swoo_2230
KEGG: sse:Ssed_2355 hypothetical protein.
       0.484
Swoo_2747
PFAM: peptidase M28; KEGG: sse:Ssed_1839 peptidase M28.
 
    0.483
Swoo_2231
KEGG: cps:CPS_0689 hypothetical protein.
       0.478
Swoo_0918
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: saz:Sama_0607 putative transcriptional regulator, CadC.
  
    0.462
Swoo_2227
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.445
Swoo_3891
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
    0.421
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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