STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2229KEGG: sse:Ssed_2356 membrane protein-like protein. (445 aa)    
Predicted Functional Partners:
Swoo_2230
KEGG: sse:Ssed_2355 hypothetical protein.
 
     0.952
Swoo_2231
KEGG: cps:CPS_0689 hypothetical protein.
       0.762
Swoo_1481
Hypothetical protein; KEGG: btr:Btr_0394 filamentous hemagglutinin.
  
     0.691
Swoo_3899
KEGG: sde:Sde_3050 hypothetical protein.
  
     0.610
Swoo_2232
KEGG: sse:Ssed_2354 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
       0.593
Swoo_0427
PFAM: peptidase domain protein; KEGG: pha:PSHAa2649 serine protease precursor.
  
     0.562
Swoo_2853
PFAM: beta-lactamase domain protein; KEGG: cps:CPS_1904 metallo-beta-lactamase family protein.
  
     0.494
Swoo_2228
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sse:Ssed_2357 peptidase S9, prolyl oligopeptidase active site domain protein.
       0.484
Swoo_4263
PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein.
 
     0.474
Swoo_2339
PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psp:PSPPH_0317 hypothetical protein.
  
     0.454
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.