STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2255TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: cps:CPS_1887 quinoprotein alcohol dehydrogenase. (588 aa)    
Predicted Functional Partners:
Swoo_2257
KEGG: pat:Patl_1857 cytochrome c550.
 
 
 0.965
Swoo_2254
PFAM: Aldehyde Dehydrogenase; KEGG: pin:Ping_2539 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
  
 
 0.940
Swoo_0375
TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sse:Ssed_4227 alcohol dehydrogenase GroES domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.915
Swoo_2241
PFAM: iron-containing alcohol dehydrogenase; KEGG: sse:Ssed_2349 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.914
Swoo_1359
PFAM: iron-containing alcohol dehydrogenase; KEGG: sse:Ssed_1258 iron-containing alcohol dehydrogenase.
     
 0.909
Swoo_1391
Acetaldehyde dehydrogenase (acetylating); Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
     
  0.900
Swoo_2256
KEGG: cps:CPS_1889 hypothetical protein; Belongs to the bacterial solute-binding protein 3 family.
 
   
 0.890
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.883
pqqB
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.876
Swoo_2259
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein.
 
  
 0.861
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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