STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2256KEGG: cps:CPS_1889 hypothetical protein; Belongs to the bacterial solute-binding protein 3 family. (299 aa)    
Predicted Functional Partners:
Swoo_2257
KEGG: pat:Patl_1857 cytochrome c550.
 
    0.960
Swoo_2258
KEGG: cps:CPS_1891 hypothetical protein.
 
  
 0.891
Swoo_2255
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: cps:CPS_1887 quinoprotein alcohol dehydrogenase.
 
   
 0.890
Swoo_2259
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein.
 
     0.881
Swoo_2261
PFAM: ABC-2 type transporter; KEGG: cps:CPS_1894 putative daunorubicin resistance ABC transporter, permease protein.
 
     0.866
Swoo_2260
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_1893 ABC transporter, ATP-binding protein.
 
     0.821
Swoo_2246
KEGG: cps:CPS_1882 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
 
 
 
 0.778
Swoo_2253
PFAM: FMN-binding domain protein; KEGG: cps:CPS_1884 putative regulatory protein NosR.
 
    0.755
Swoo_2244
KEGG: pat:Patl_1868 hypothetical protein.
  
     0.734
Swoo_2247
PFAM: domain of unknown function DUF1745; KEGG: cps:CPS_1883 hypothetical protein.
 
    0.733
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.