Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2257KEGG: pat:Patl_1857 cytochrome c550. (161 aa)    
Predicted Functional Partners:
Swoo_2255
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: cps:CPS_1887 quinoprotein alcohol dehydrogenase.
 
 
 0.965
Swoo_2256
KEGG: cps:CPS_1889 hypothetical protein; Belongs to the bacterial solute-binding protein 3 family.
 
    0.960
Swoo_2259
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein.
 
   0.924
Swoo_2247
PFAM: domain of unknown function DUF1745; KEGG: cps:CPS_1883 hypothetical protein.
 
    0.910
Swoo_2258
KEGG: cps:CPS_1891 hypothetical protein.
 
     0.890
Swoo_2261
PFAM: ABC-2 type transporter; KEGG: cps:CPS_1894 putative daunorubicin resistance ABC transporter, permease protein.
 
    0.871
Swoo_4166
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.829
Swoo_2260
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_1893 ABC transporter, ATP-binding protein.
 
    0.822
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.812
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.809
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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