Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2263PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_0679 conserved hypothetical TonB-dependent receptor. (1015 aa)    
Predicted Functional Partners:
Swoo_0230
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3904 TonB-dependent receptor.
  
     0.718
Swoo_0213
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_0989 TonB-dependent receptor.
  
     0.708
Swoo_2747
PFAM: peptidase M28; KEGG: sse:Ssed_1839 peptidase M28.
  
     0.673
Swoo_4039
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_4358 TonB-dependent receptor.
  
     0.629
Swoo_4030
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1722 TonB-dependent receptor.
  
     0.608
Swoo_2108
KEGG: spl:Spea_2450 conserved hypothetical protein.
  
     0.607
Swoo_1209
PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: spl:Spea_0992 putative two component transcriptional regulator, winged helix family.
 
     0.574
Swoo_4114
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3466 TonB-dependent receptor.
  
   
 0.571
Swoo_3481
TIGRFAM: TonB family protein; KEGG: sse:Ssed_3332 TonB family protein.
 
 
 
 0.549
Swoo_2544
PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: sse:Ssed_2057 peptidyl-dipeptidase A.
  
     0.542
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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