Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2271PFAM: CopG domain protein DNA-binding domain protein; KEGG: sse:Ssed_2336 CopG domain protein DNA-binding domain protein. (90 aa)    
Predicted Functional Partners:
Swoo_2272
KEGG: spl:Spea_2053 conserved hypothetical protein.
       0.815
Swoo_2270
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
  
  
 0.787
Swoo_0443
PFAM: amino acid-binding ACT domain protein; KEGG: sse:Ssed_4164 acetolactate synthase small subunit.
  
     0.758
Swoo_3641
PFAM: Uncharacterized lipoprotein; KEGG: sse:Ssed_3439 uncharacterized lipoprotein.
  
    0.743
Swoo_1799
Inosine kinase; PFAM: PfkB domain protein; KEGG: sse:Ssed_2845 inosine kinase.
  
     0.731
seqA
SeqA family protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
 
    0.689
Swoo_2786
PFAM: protein of unknown function DUF1414; KEGG: sse:Ssed_1809 protein of unknown function DUF1414; Belongs to the UPF0352 family.
  
    0.614
Swoo_0671
KEGG: sse:Ssed_3864 hypothetical protein.
  
     0.575
Swoo_0282
PFAM: protein of unknown function Spy-related; KEGG: sse:Ssed_0280 protein of unknown function, Spy-related.
  
     0.566
Swoo_0326
PFAM: protein of unknown function DUF1439; KEGG: sse:Ssed_4279 protein of unknown function DUF1439.
  
     0.526
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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