STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2272KEGG: spl:Spea_2053 conserved hypothetical protein. (73 aa)    
Predicted Functional Partners:
Swoo_2271
PFAM: CopG domain protein DNA-binding domain protein; KEGG: sse:Ssed_2336 CopG domain protein DNA-binding domain protein.
       0.790
Swoo_2167
KEGG: sse:Ssed_2439 hypothetical protein.
  
     0.774
Swoo_1710
KEGG: sse:Ssed_2935 hypothetical protein.
  
     0.772
Swoo_1804
KEGG: sse:Ssed_2840 hypothetical protein.
  
     0.765
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
  
     0.760
Swoo_0788
KEGG: sse:Ssed_3796 hypothetical protein.
  
     0.750
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
     0.747
Swoo_1590
KEGG: sse:Ssed_3094 hypothetical protein.
  
     0.732
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.725
Swoo_3610
PFAM: protein of unknown function DUF539; KEGG: slo:Shew_2874 protein of unknown function DUF539.
  
     0.708
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.