Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2279PFAM: Transketolase central region; Transketolase domain protein; KEGG: sse:Ssed_2328 transketolase, central region. (325 aa)    
Predicted Functional Partners:
Swoo_2278
PFAM: dehydrogenase E1 component; KEGG: sse:Ssed_2329 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring).
 0.999
Swoo_2280
Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sse:Ssed_2327 dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
 
 0.999
Swoo_2931
Pyruvate dehydrogenase (acetyl-transferring); PFAM: dehydrogenase E1 component; KEGG: cps:CPS_3052 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit.
 0.997
Swoo_1035
PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; KEGG: sdn:Sden_3017 transketolase, central region.
 
0.987
Swoo_0321
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: spl:Spea_0421 dihydrolipoamide dehydrogenase.
 
 0.982
Swoo_2934
PFAM: catalytic domain of components of various dehydrogenase complexes; KEGG: smu:SMU.1421 branched-chain alpha-keto acid dehydrogenase subunit E2.
 
 0.967
Swoo_2710
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: sse:Ssed_1877 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.942
Swoo_2883
KEGG: sse:Ssed_1708 formate C-acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL.
   
 
 0.931
Swoo_1838
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
 
 0.922
Swoo_0406
KEGG: sse:Ssed_4176 branched-chain-amino-acid transaminase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV.
   
 0.914
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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