Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2286KEGG: spl:Spea_2842 conserved hypothetical protein. (494 aa)    
Predicted Functional Partners:
Swoo_1314
KEGG: sse:Ssed_1214 hypothetical protein.
  
     0.576
Swoo_0364
PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_1706 conserved hypothetical protein-signal peptide and transmembrane prediction.
  
     0.529
Swoo_1174
KEGG: spl:Spea_0980 hypothetical protein.
  
     0.496
Swoo_2285
KEGG: spl:Spea_2841 putative hydrolase.
  
    0.459
Swoo_0366
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_1827 hypothetical protein.
  
     0.451
Swoo_1175
PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: spl:Spea_0981 oxidoreductase molybdopterin binding.
  
     0.445
Swoo_3940
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pdi:BDI_2661 gluconolactonase precursor.
  
     0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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