STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2293PFAM: protein of unknown function DUF885; KEGG: sse:Ssed_2317 protein of unknown function DUF885. (591 aa)    
Predicted Functional Partners:
Swoo_2747
PFAM: peptidase M28; KEGG: sse:Ssed_1839 peptidase M28.
  
     0.538
Swoo_3067
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: sse:Ssed_1583 hypothetical protein.
  
     0.516
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.516
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
     0.511
Swoo_2292
ATP-dependent DNA helicase, RecQ family; KEGG: sse:Ssed_2318 23S rRNA (Gm2251)-methyltransferase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases.
       0.501
Swoo_4068
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3718 integral membrane sensor signal transduction histidine kinase.
  
     0.491
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
  
     0.488
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
  
     0.458
Swoo_1784
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2861 TonB-dependent receptor.
  
     0.448
Swoo_2294
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_2316 response regulator receiver protein.
       0.439
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.