Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2318Hypothetical protein; KEGG: amr:AM1_3564 lipoxygenase. (714 aa)    
Predicted Functional Partners:
Swoo_2919
Arachidonate 15-lipoxygenase; PFAM: Lipoxygenase; KEGG: amr:AM1_3903 lipoxygenase.
  
  
 
0.929
Swoo_3415
PFAM: Lipoxygenase; KEGG: bte:BTH_I2353 arachidonate 15-lipoxygenase precursor (15-LOX).
  
  
 
0.907
Swoo_0786
Phospholipase A(2); Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
  0.900
Swoo_2317
Hypothetical protein.
       0.737
Swoo_2319
PFAM: protein of unknown function DUF1329; KEGG: cps:CPS_3433 hypothetical protein.
       0.509
Swoo_0744
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0640 TPR repeat-containing protein.
  
     0.506
Swoo_2320
PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein.
       0.469
Swoo_1844
KEGG: sse:Ssed_2808 hypothetical protein.
  
     0.436
Swoo_1970
PFAM: alpha/beta hydrolase fold; KEGG: pmy:Pmen_2705 alpha/beta hydrolase fold.
  
   
 0.427
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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