Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2320PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein. (606 aa)    
Predicted Functional Partners:
Swoo_2319
PFAM: protein of unknown function DUF1329; KEGG: cps:CPS_3433 hypothetical protein.
 
    0.974
Swoo_2137
PFAM: protein of unknown function DUF1329; KEGG: sse:Ssed_2479 protein of unknown function DUF1329.
 
    0.918
Swoo_2138
KEGG: sse:Ssed_2478 BNR repeat protein.
 
    0.866
Swoo_2139
KEGG: sse:Ssed_2477 hypothetical protein.
 
    0.802
Swoo_2318
Hypothetical protein; KEGG: amr:AM1_3564 lipoxygenase.
       0.469
Swoo_2317
Hypothetical protein.
       0.450
Swoo_4061
KEGG: sbn:Sbal195_3516 putative lipoprotein.
  
     0.433
Swoo_2244
KEGG: pat:Patl_1868 hypothetical protein.
  
     0.424
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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