Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2326PFAM: Domain of unknown function DUF1904; KEGG: sse:Ssed_2289 hypothetical protein. (110 aa)    
Predicted Functional Partners:
Swoo_2327
CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: phospholipase D/Transphosphatidylase; KEGG: sse:Ssed_2288 phospholipase D/transphosphatidylase.
       0.762
Swoo_3444
KEGG: spl:Spea_1582 conserved hypothetical protein.
  
     0.557
Swoo_2328
Hypothetical protein.
       0.502
Swoo_0271
KEGG: spl:Spea_3943 conserved hypothetical protein.
  
     0.501
Swoo_1909
PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sse:Ssed_3630 OmpA domain protein transmembrane region-containing protein.
  
     0.482
Swoo_2325
KEGG: sbl:Sbal_2079 hypothetical protein.
       0.465
Swoo_4489
KEGG: sse:Ssed_0473 hypothetical protein.
  
     0.459
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
  
     0.458
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
  
     0.438
Swoo_0797
PFAM: heat shock protein DnaJ domain protein; KEGG: sse:Ssed_3786 heat shock protein DnaJ domain protein.
  
 
   0.425
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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