STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2335KEGG: sse:Ssed_2276 hypothetical protein. (246 aa)    
Predicted Functional Partners:
Swoo_2334
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sse:Ssed_2277 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF.
 
    
0.810
Swoo_0386
KEGG: spl:Spea_0282 conserved hypothetical protein.
  
    0.663
Swoo_3083
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1252 TonB-dependent receptor.
 
     0.630
Swoo_1426
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3760 TonB-dependent receptor.
 
     0.600
Swoo_3254
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1520 TonB-dependent receptor.
 
     0.595
Swoo_1784
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2861 TonB-dependent receptor.
 
     0.579
Swoo_2388
KEGG: sse:Ssed_2236 GCN5-related N-acetyltransferase.
  
     0.559
Swoo_0015
Amidohydrolase; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: sse:Ssed_0018 amidohydrolase.
  
     0.551
Swoo_0158
PFAM: peptidase M14 carboxypeptidase A; KEGG: sse:Ssed_0178 peptidase M14, carboxypeptidase A.
  
     0.538
Swoo_0991
PFAM: Phosphoglycerate mutase; KEGG: sse:Ssed_0941 hypothetical protein.
 
     0.537
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.