Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2336KEGG: pha:PSHAb0338 homogentisate 1,2-dioxygenase (Homogentisicase) (homogentisate oxygenase) (Homogentisic acid oxidase) [HGD]; TIGRFAM: homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase. (430 aa)    
Predicted Functional Partners:
Swoo_1932
KEGG: sse:Ssed_2687 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
 0.998
Swoo_1719
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: sse:Ssed_2926 response regulator receiver protein.
 
 
 0.994
Swoo_1715
Phenylalanine-4-hydroxylase; KEGG: sse:Ssed_2930 phenylalanine 4-monooxygenase; TIGRFAM: phenylalanine-4-hydroxylase; PFAM: aromatic amino acid hydroxylase.
 
  
 0.928
Swoo_1718
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sse:Ssed_2927 fumarylacetoacetate (FAA) hydrolase.
 
  
 0.829
Swoo_2337
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: pha:PSHAb0339 putative bacterial regulatory protein, MarR family.
 
   
 0.807
Swoo_2723
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sse:Ssed_1865 fumarylacetoacetate (FAA) hydrolase.
  
  
 0.705
Swoo_1716
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: sse:Ssed_2929 transcriptional coactivator/pterin dehydratase.
  
  
 0.683
Swoo_0634
PFAM: regulatory protein MarR; KEGG: sse:Ssed_4032 transcriptional regulatory protein.
 
   
 0.644
kynA
Tryptophan 23-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
 
  
 0.560
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
 
  
 0.520
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.