Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2339PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psp:PSPPH_0317 hypothetical protein. (221 aa)    
Predicted Functional Partners:
Swoo_2338
KEGG: ppf:Pput_1637 hypothetical protein.
       0.743
Swoo_2121
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2495 integral membrane sensor signal transduction histidine kinase.
  
     0.590
Swoo_1481
Hypothetical protein; KEGG: btr:Btr_0394 filamentous hemagglutinin.
 
     0.528
Swoo_0938
PFAM: pentapeptide repeat protein; Ion transport 2 domain protein; KEGG: sse:Ssed_0839 ion transport 2 domain protein.
  
     0.506
Swoo_2125
TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: sse:Ssed_2491 sortase family protein.
  
     0.487
Swoo_4297
KEGG: shm:Shewmr7_0124 hypothetical protein; Belongs to the BI1 family.
  
     0.481
Swoo_2229
KEGG: sse:Ssed_2356 membrane protein-like protein.
  
     0.454
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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