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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2340KEGG: pvi:Cvib_0991 hypothetical protein. (128 aa)    
Predicted Functional Partners:
Swoo_2341
KEGG: mfa:Mfla_1438 NAD-dependent epimerase/dehydratase.
       0.773
Swoo_2342
KEGG: ccr:CC_2898 hypothetical protein.
       0.732
Swoo_2343
PFAM: Saccharopine dehydrogenase; KEGG: rso:RSc1138 putative transmembrane protein.
       0.654
Swoo_3137
PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: chu:CHU_2470 hypothetical protein.
 
    0.406
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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