Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2343PFAM: Saccharopine dehydrogenase; KEGG: rso:RSc1138 putative transmembrane protein. (376 aa)    
Predicted Functional Partners:
Swoo_2342
KEGG: ccr:CC_2898 hypothetical protein.
 
     0.835
Swoo_2341
KEGG: mfa:Mfla_1438 NAD-dependent epimerase/dehydratase.
 
   
 0.801
Swoo_2340
KEGG: pvi:Cvib_0991 hypothetical protein.
       0.658
folE
PFAM: GTP cyclohydrolase I; KEGG: spl:Spea_3842 GTP cyclohydrolase I.
    
   0.648
Swoo_1907
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0071 TPR repeat-containing protein.
  
 
   0.498
Swoo_0623
KEGG: sse:Ssed_4040 aspartate kinase, homoserine dehydrogenase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
  
 0.437
Swoo_1270
KEGG: sse:Ssed_1175 aspartate kinase, homoserine dehydrogenase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
  
 0.437
Swoo_4263
PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein.
 
     0.429
Swoo_0451
PFAM: protein of unknown function DUF1566; KEGG: shw:Sputw3181_0674 protein of unknown function DUF1566.
  
     0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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