Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2346PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: spl:Spea_2206 amino acid permease-associated region. (447 aa)    
Predicted Functional Partners:
Swoo_2344
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: spl:Spea_2204 trimethyllysine dioxygenase.
       0.741
Swoo_2345
Threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: spl:Spea_2205 threonine aldolase.
       0.741
Swoo_2206
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: slo:Shew_1886 alpha amylase, catalytic region.
    
 0.454
Swoo_2207
PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; SMART: alpha amylase catalytic sub domain; KEGG: shm:Shewmr7_2211 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
    
 0.454
Swoo_2210
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sfr:Sfri_1788 alpha amylase, catalytic region.
    
 0.454
Swoo_3416
Alpha amylase catalytic region; PFAM: glycoside hydrolase starch-binding; cell surface receptor IPT/TIG domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: spb:M28_Spy1046 alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
    
 0.454
trpF
PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Indole-3-glycerol phosphate synthase; KEGG: sse:Ssed_1683 indole-3-glycerol-phosphate synthase, phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
    
 
 0.429
Swoo_2347
KEGG: spl:Spea_2301 conserved hypothetical protein.
       0.412
kdkA
Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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