STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2358Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: smd:Smed_5741 helix-turn-helix-domain containing protein AraC type. (234 aa)    
Predicted Functional Partners:
Swoo_0361
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: pat:Patl_1157 transcriptional regulator, AraC family.
  
     0.731
Swoo_2093
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbn:Sbal195_3318 transcriptional regulator, AraC family.
  
     0.700
Swoo_2971
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_1617 transcriptional regulator, AraC family.
  
     0.697
Swoo_0565
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbn:Sbal195_1435 transcriptional regulator, AraC family.
  
   0.696
Swoo_0135
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2491 response regulator receiver protein.
  
     0.668
Swoo_3311
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pat:Patl_1900 transcriptional regulator, AraC family.
  
     0.662
Swoo_2795
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sse:Ssed_1801 transcriptional regulator, AraC family.
  
     0.636
Swoo_3138
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sbn:Sbal195_1599 transcriptional regulator, AraC family.
  
     0.609
Swoo_2357
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; KEGG: gtn:GTNG_0147 RNA polymerase ECF(extracytoplasmic function)-typesigma factor (sigma-W).
 
     0.603
Swoo_2359
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: sen:SACE_3710 putative alkaline serine protease.
       0.406
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.