Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2371KEGG: vpa:VPA0447 hypothetical protein. (550 aa)    
Predicted Functional Partners:
Swoo_0564
PFAM: polysaccharide deacetylase; Carbohydrate-binding family V/XII; KEGG: vha:VIBHAR_03626 hypothetical protein.
 
     0.782
Swoo_4488
Proprotein convertase P; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vpa:VPA1071 putative extracellular serine protease; Belongs to the peptidase S8 family.
  
     0.746
Swoo_1054
KEGG: spl:Spea_0899 conserved hypothetical protein.
  
     0.705
Swoo_1432
KEGG: sse:Ssed_3194 hypothetical protein.
  
     0.692
Swoo_3975
PFAM: MltA-interacting MipA family protein; KEGG: sbl:Sbal_0752 MltA-interacting MipA family protein.
  
     0.679
Swoo_3010
PFAM: histidine kinase A domain protein; KEGG: vfi:VFA0265 sensory transduction protein kinase.
  
     0.678
Swoo_4632
PFAM: Protein of unknown function DUF1778; KEGG: sbm:Shew185_0723 protein of unknown function DUF1778.
   
   0.656
Swoo_4489
KEGG: sse:Ssed_0473 hypothetical protein.
  
     0.647
Swoo_1053
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_1001 hypothetical protein.
 
  
 0.640
Swoo_1959
PFAM: MscS Mechanosensitive ion channel; KEGG: sse:Ssed_0155 MscS mechanosensitive ion channel.
 
     0.632
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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