STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2373PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: sbl:Sbal_3200 peptidase S8 and S53, subtilisin, kexin, sedolisin. (628 aa)    
Predicted Functional Partners:
Swoo_2374
PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_1931 GCN5-related N-acetyltransferase.
 
    0.505
Swoo_4488
Proprotein convertase P; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vpa:VPA1071 putative extracellular serine protease; Belongs to the peptidase S8 family.
  
   
 0.460
Swoo_3767
PFAM: protease-associated PA domain protein; KEGG: shn:Shewana3_0797 protease-associated PA domain protein.
  
   0.441
Swoo_2953
PFAM: PKD domain containing protein; peptidase M14 carboxypeptidase A; KEGG: hch:HCH_04864 predicted carboxypeptidase.
  
     0.422
Swoo_4827
TIGRFAM: M6 family metalloprotease domain protein; PFAM: PKD domain containing protein; peptidase M6 immune inhibitor A; KEGG: sse:Ssed_4432 peptidase M6, immune inhibitor A.
 
  
 0.414
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.