Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2377PFAM: blue (type 1) copper domain protein; KEGG: lbj:LBJ_2376 plastocyanin related protein. (109 aa)    
Predicted Functional Partners:
Swoo_2376
Hypothetical protein; KEGG: lic:LIC10684 putative cytochrome c.
 
   
 0.867
Swoo_2378
PFAM: Di-haem cytochrome c peroxidase; KEGG: lic:LIC10682 methylamine utilization protein/cytochrome c peroxidase.
  
  
 0.774
Swoo_2375
PFAM: ATP-binding region ATPase domain protein; KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase.
       0.773
Swoo_1417
PFAM: multicopper oxidase type 1; multicopper oxidase type 3; KEGG: net:Neut_1403 multicopper oxidase, type 3.
 
 
 
 0.761
Swoo_1414
PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: net:Neut_1406 multicopper oxidase, type 3.
 
 
 
 0.744
Swoo_2946
KEGG: sfr:Sfri_1417 hypothetical protein.
  
     0.707
Swoo_4166
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.558
Swoo_1415
PFAM: cytochrome c class I; KEGG: nwi:Nwi_2649 cytochrome c, class IC.
  
   
 0.499
Swoo_2379
KEGG: mgm:Mmc1_0738 hypothetical protein.
       0.475
Swoo_4165
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.432
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.