Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2378PFAM: Di-haem cytochrome c peroxidase; KEGG: lic:LIC10682 methylamine utilization protein/cytochrome c peroxidase. (346 aa)    
Predicted Functional Partners:
Swoo_2376
Hypothetical protein; KEGG: lic:LIC10684 putative cytochrome c.
 
  
 0.828
Swoo_2377
PFAM: blue (type 1) copper domain protein; KEGG: lbj:LBJ_2376 plastocyanin related protein.
  
  
 0.774
Swoo_2375
PFAM: ATP-binding region ATPase domain protein; KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase.
       0.763
Swoo_2379
KEGG: mgm:Mmc1_0738 hypothetical protein.
       0.484
Swoo_3207
PFAM: OmpW family protein; KEGG: spc:Sputcn32_1392 OmpW family protein.
   
    0.441
Swoo_1282
Phosphoketolase; PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: sse:Ssed_1186 phosphoketolase.
   
    0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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