STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2379KEGG: mgm:Mmc1_0738 hypothetical protein. (312 aa)    
Predicted Functional Partners:
Swoo_2378
PFAM: Di-haem cytochrome c peroxidase; KEGG: lic:LIC10682 methylamine utilization protein/cytochrome c peroxidase.
       0.484
Swoo_2375
PFAM: ATP-binding region ATPase domain protein; KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase.
       0.475
Swoo_2376
Hypothetical protein; KEGG: lic:LIC10684 putative cytochrome c.
       0.475
Swoo_2377
PFAM: blue (type 1) copper domain protein; KEGG: lbj:LBJ_2376 plastocyanin related protein.
       0.475
Swoo_2380
PFAM: pseudouridine synthase; KEGG: sse:Ssed_2250 pseudouridine synthase.
       0.461
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.