STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2382PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sse:Ssed_2244 phage integrase family protein; Belongs to the 'phage' integrase family. (354 aa)    
Predicted Functional Partners:
Swoo_0661
KEGG: sse:Ssed_3874 hypothetical protein.
  
     0.576
Swoo_0117
PFAM: MORN variant repeat protein; KEGG: slo:Shew_2461 MORN variant repeat protein.
  
     0.484
Swoo_0646
PFAM: Curlin associated repeat protein; KEGG: sbl:Sbal_3498 curlin associated repeat protein.
  
     0.462
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.450
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.447
Swoo_1259
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: sse:Ssed_1164 chorismate mutase.
  
    0.429
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.424
Swoo_3444
KEGG: spl:Spea_1582 conserved hypothetical protein.
  
     0.424
Swoo_0551
KEGG: sse:Ssed_4086 hypothetical protein.
  
     0.417
Swoo_4577
KEGG: spl:Spea_3873 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
   
    0.416
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.