STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2389PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_2235 FAD dependent oxidoreductase. (446 aa)    
Predicted Functional Partners:
Swoo_2388
KEGG: sse:Ssed_2236 GCN5-related N-acetyltransferase.
 
     0.797
Swoo_1130
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_1060 glutamate--putrescine ligase.
 
  
 0.682
Swoo_1129
PFAM: peptidase C26; KEGG: sse:Ssed_1059 peptidase C26.
 
  
 0.662
Swoo_1114
PFAM: aminotransferase class-III; KEGG: sse:Ssed_1044 beta-alanine--pyruvate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.509
Swoo_1128
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sse:Ssed_1058 transcriptional regulator, XRE family.
 
  
 0.496
Swoo_4077
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_3727 NADH dehydrogenase.
   
 
 0.489
Swoo_4613
KEGG: ilo:IL0249 hypothetical protein.
  
     0.469
Swoo_3862
KEGG: slo:Shew_3172 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.442
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.437
Swoo_2387
KEGG: sse:Ssed_2238 hypothetical protein.
       0.432
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.