STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2391KEGG: sse:Ssed_2233 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Swoo_2121
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2495 integral membrane sensor signal transduction histidine kinase.
  
     0.604
Swoo_4101
KEGG: sbn:Sbal195_4665 hypothetical protein.
  
     0.603
Swoo_2899
KEGG: sse:Ssed_1695 hypothetical protein.
  
     0.541
Swoo_4118
KEGG: sse:Ssed_3965 hypothetical protein.
  
     0.541
Swoo_4053
KEGG: mmw:Mmwyl1_1485 putative transcriptional regulator, Fis family protein.
  
     0.521
Swoo_2390
KEGG: sse:Ssed_2234 spermidine/putrescine-binding periplasmic protein-like protein.
       0.512
Swoo_3055
KEGG: sse:Ssed_1593 hypothetical protein.
  
     0.487
Swoo_2392
KEGG: sse:Ssed_2232 hypothetical protein.
       0.462
sprT
PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: sse:Ssed_3970 protein of unknown function DUF335, SprT; Belongs to the SprT family.
  
     0.451
Swoo_3864
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_3930 transcriptional regulator, LysR family.
  
     0.448
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.