Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2397KEGG: sal:Sala_0301 putative transcriptional regulator, TetR family. (194 aa)    
Predicted Functional Partners:
Swoo_0981
PFAM: DSBA oxidoreductase; KEGG: pat:Patl_1112 DsbA oxidoreductase.
 
     0.766
Swoo_2398
Glutathione S-transferase-like protein; KEGG: bra:BRADO0919 hypothetical protein.
 
     0.697
Swoo_2408
PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein.
 
     0.690
Swoo_2404
KEGG: maq:Maqu_1186 hypothetical protein.
 
     0.660
Swoo_2400
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
 
     0.653
Swoo_2403
KEGG: maq:Maqu_1186 hypothetical protein.
 
     0.648
Swoo_4267
PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_0702 beta-lactamase-like protein.
  
     0.502
Swoo_3302
PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_3184 metallo-beta-lactamase superfamily protein.
  
     0.456
Swoo_2406
Hypothetical protein; KEGG: pat:Patl_3336 glutathione S-transferase.
 
     0.447
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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