STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2399PFAM: ThiJ/PfpI domain protein; KEGG: esa:ESA_02574 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Swoo_2968
PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN2870 hypothetical protein.
  
     0.744
Swoo_2398
Glutathione S-transferase-like protein; KEGG: bra:BRADO0919 hypothetical protein.
  
   0.711
Swoo_2400
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
  
    0.633
Swoo_3925
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rde:RD1_4233 formate dehydrogenase, beta subunit.
  
 
 0.604
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
  
 
 0.443
Swoo_2158
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: sse:Ssed_2446 putative serine protein kinase, PrkA.
   
    0.416
Swoo_3394
PFAM: Catalase domain protein; KEGG: sse:Ssed_3251 catalase; Belongs to the catalase family.
  
 
 0.403
Swoo_3881
PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase; Belongs to the catalase family.
  
 
 0.403
Swoo_4923
Catalase domain protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
  
 
 0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.