Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2401PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pde:Pden_0590 membrane protein involved in aromatic hydrocarbon degradation. (428 aa)    
Predicted Functional Partners:
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.715
Swoo_2713
KEGG: sse:Ssed_1873 protein of unknown function DUF1285.
  
     0.607
Swoo_2963
PFAM: protein of unknown function DUF1643; KEGG: ecs:ECs5248 hypothetical protein.
  
     0.569
Swoo_2402
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mav:MAV_3670 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.526
Swoo_3324
KEGG: sse:Ssed_1331 hypothetical protein.
  
     0.483
Swoo_4107
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3954 protein of unknown function DUF214.
  
     0.479
Swoo_2767
KEGG: slo:Shew_1490 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.456
Swoo_4108
KEGG: spl:Spea_0625 conserved hypothetical protein.
  
     0.453
Swoo_2400
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
       0.443
Swoo_1702
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sse:Ssed_2943 response regulator receiver modulated serine phosphatase.
  
     0.409
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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