Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2402PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mav:MAV_3670 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (278 aa)    
Predicted Functional Partners:
Swoo_3211
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sse:Ssed_1465 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.744
Swoo_0378
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sse:Ssed_4223 short chain dehydrogenase/reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.677
Swoo_2403
KEGG: maq:Maqu_1186 hypothetical protein.
       0.536
Swoo_2401
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pde:Pden_0590 membrane protein involved in aromatic hydrocarbon degradation.
       0.526
Swoo_2386
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sse:Ssed_2239 short chain dehydrogenase.
 
    0.495
Swoo_2003
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1268 ABC transporter, ATP-binding protein.
  
     0.477
uppS
Undecaprenyl diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.
 
     0.477
Swoo_2405
Molydopterin dinucleotide-binding region; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hau:Haur_2925 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.474
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.472
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
   
    0.442
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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