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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2406Hypothetical protein; KEGG: pat:Patl_3336 glutathione S-transferase. (347 aa)    
Predicted Functional Partners:
Swoo_4556
KEGG: spl:Spea_0617 hypothetical protein.
  
     0.763
Swoo_4116
KEGG: spl:Spea_0617 hypothetical protein.
  
     0.761
Swoo_2405
Molydopterin dinucleotide-binding region; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hau:Haur_2925 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.696
Swoo_2407
Hypothetical protein.
       0.678
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.630
Swoo_4267
PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_0702 beta-lactamase-like protein.
 
     0.624
Swoo_2404
KEGG: maq:Maqu_1186 hypothetical protein.
 
     0.610
Swoo_0981
PFAM: DSBA oxidoreductase; KEGG: pat:Patl_1112 DsbA oxidoreductase.
 
     0.577
Swoo_3302
PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_3184 metallo-beta-lactamase superfamily protein.
 
     0.546
Swoo_2403
KEGG: maq:Maqu_1186 hypothetical protein.
 
     0.519
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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