STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2408PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein. (548 aa)    
Predicted Functional Partners:
Swoo_0418
PFAM: Radical SAM domain protein; KEGG: shn:Shewana3_3560 radical SAM domain protein.
 
 
 0.777
Swoo_2397
KEGG: sal:Sala_0301 putative transcriptional regulator, TetR family.
 
     0.689
Swoo_3652
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_2526 tetratricopeptide TPR_2.
 
     0.537
glaA
Conserved hypothetical protein; Alpha-galactosidase that specifically removes branched alpha- 1,3-linked galactose residues present in blood group B antigens. Has no activity toward linear alpha-1,3-linked galactose residues (By similarity); Belongs to the glycosyl hydrolase 110 family. A subfamily.
  
     0.526
Swoo_3211
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sse:Ssed_1465 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.522
Swoo_2409
PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_1189 long-chain-fatty-acid--CoA ligase.
       0.514
Swoo_2398
Glutathione S-transferase-like protein; KEGG: bra:BRADO0919 hypothetical protein.
 
     0.480
Swoo_4267
PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_0702 beta-lactamase-like protein.
  
   
 0.456
Swoo_1248
Hypothetical protein; KEGG: pdi:BDI_2833 conserved hypothetical protein, possible ATP/GTP-binding site.
  
     0.442
Swoo_3302
PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_3184 metallo-beta-lactamase superfamily protein.
  
   
 0.431
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.