Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2420Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sse:Ssed_2216 heavy metal translocating P-type ATPase. (792 aa)    
Predicted Functional Partners:
Swoo_2418
KEGG: sse:Ssed_2218 hypothetical protein.
 
   
 0.946
Swoo_2419
TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: sse:Ssed_2217 cytochrome oxidase maturation protein, cbb3-type.
 
  
 0.930
Swoo_2467
KEGG: sse:Ssed_2169 hypothetical protein.
  
 
 0.868
Swoo_2422
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.865
Swoo_2421
KEGG: sse:Ssed_2215 hypothetical protein.
 
    0.864
Swoo_2424
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: sse:Ssed_2212 cytochrome c oxidase, cbb3-type, subunit II.
 
   
 0.859
Swoo_2425
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: sse:Ssed_2211 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.840
Swoo_2417
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sse:Ssed_2219 transcriptional regulator, Crp/Fnr family.
 
   
 0.759
Swoo_4884
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: sse:Ssed_4476 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
  
 0.696
Swoo_3994
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: sse:Ssed_3694 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
  
 0.689
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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