STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2437PFAM: LytTr DNA-binding region; KEGG: pat:Patl_2385 response regulator receiver protein. (273 aa)    
Predicted Functional Partners:
Swoo_4381
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: cps:CPS_3719 sensor histidine kinase.
 
 
 0.680
Swoo_2438
KEGG: asa:ASA_0633 hypothetical protein.
       0.645
Swoo_4847
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: sde:Sde_3732 putative regulator of cell autolysis-like.
 
 
 0.574
Swoo_3658
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_2359 TonB-dependent receptor.
  
     0.495
Swoo_2924
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_3035 TonB-dependent receptor.
  
     0.486
Swoo_4375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1397 TonB-dependent receptor.
  
     0.462
Swoo_2436
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: aba:Acid345_2642 Kelch repeat protein.
       0.453
Swoo_2439
Transcriptional regulator, TraR/DksA family; KEGG: scl:sce9023 putative DnaK suppressor protein.
       0.453
Swoo_4159
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: spl:Spea_3518 peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.452
Swoo_2921
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1021 TonB-dependent receptor.
  
     0.447
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.