Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2438KEGG: asa:ASA_0633 hypothetical protein. (492 aa)    
Predicted Functional Partners:
Swoo_2437
PFAM: LytTr DNA-binding region; KEGG: pat:Patl_2385 response regulator receiver protein.
       0.645
Swoo_2439
Transcriptional regulator, TraR/DksA family; KEGG: scl:sce9023 putative DnaK suppressor protein.
       0.533
Swoo_1556
KEGG: vfi:VFA0631 hypothetical protein.
  
     0.422
Swoo_3976
KEGG: sbn:Sbal195_3688 hypothetical protein.
  
     0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.