Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_2450PFAM: Glutathione S-transferase domain; KEGG: prw:PsycPRwf_1060 glutathione S-transferase-like protein. (322 aa)    
Predicted Functional Partners:
Swoo_2451
KEGG: prw:PsycPRwf_1060 glutathione S-transferase-like protein.
 
    
0.771
Swoo_2449
KEGG: plu:plu2185 hypothetical protein.
       0.628
Swoo_2448
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: spl:Spea_0905 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
  
 0.541
Swoo_2452
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VF1066 transcriptional regulators, LysR family.
       0.520
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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