STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2453PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sfr:Sfri_1406 antibiotic biosynthesis monooxygenase. (96 aa)    
Predicted Functional Partners:
Swoo_2454
PFAM: nitroreductase; KEGG: spl:Spea_2510 nitroreductase.
 
    0.643
Swoo_3867
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vpa:VP2167 hypothetical protein.
  
     0.625
Swoo_3993
KEGG: sse:Ssed_3693 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase.
      
 0.618
Swoo_3369
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vvy:VV2401 hypothetical protein.
  
     0.613
Swoo_3994
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: sse:Ssed_3694 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
      
 0.611
Swoo_2448
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: spl:Spea_0905 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
 
     0.533
Swoo_2452
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VF1066 transcriptional regulators, LysR family.
       0.490
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.