Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Swoo_2465PFAM: peptidase S24 and S26 domain protein; KEGG: sse:Ssed_2172 SOS-response transcriptional repressor LexA -like protein; Belongs to the peptidase S24 family. (142 aa)    
Predicted Functional Partners:
Swoo_2466
PFAM: UMUC domain protein DNA-repair protein; KEGG: sse:Ssed_2171 DNA-directed DNA polymerase.
 
 
 0.982
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.960
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
 
 
 0.787
Swoo_3359
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.731
Swoo_2130
PFAM: YebG family protein; KEGG: sse:Ssed_2486 YebG family protein.
   
  
 0.721
Swoo_0179
Conserved hypothetical protein; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division.
  
  
 0.622
trpF
PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Indole-3-glycerol phosphate synthase; KEGG: sse:Ssed_1683 indole-3-glycerol-phosphate synthase, phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
     
 0.513
Swoo_2464
Inorganic diphosphatase; PFAM: phosphoesterase RecJ domain protein; DHHA2 domain protein; KEGG: sse:Ssed_2173 inorganic diphosphatase.
       0.499
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
      
 0.475
Swoo_2970
PFAM: regulatory protein RecX; KEGG: sse:Ssed_3210 regulatory protein RecX.
   
  
 0.460
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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