STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2473PFAM: protein of unknown function UPF0005; KEGG: sse:Ssed_2136 protein of unknown function UPF0005; Belongs to the BI1 family. (219 aa)    
Predicted Functional Partners:
Swoo_2903
PFAM: peptidase S49; Peptidase S49 domain protein; KEGG: sse:Ssed_1694 peptidase S49, N-terminal domain protein.
  
   
 0.683
Swoo_4930
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
     
 0.658
htpX
HtpX domain protein; PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: sse:Ssed_2770 HtpX domain protein; Belongs to the peptidase M48B family.
  
  
 0.553
Swoo_2474
TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: sse:Ssed_2135 DsrE family protein.
       0.541
Swoo_3564
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
     
 0.511
Swoo_2477
Sulfur relay protein, TusE/DsrC/DsvC family; Part of a sulfur-relay system.
     
 0.482
Swoo_2981
PFAM: Colicin V production protein; KEGG: sse:Ssed_1655 colicin V production protein.
  
    0.481
Swoo_2475
TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: sse:Ssed_2134 DsrE family protein; Belongs to the DsrF/TusC family.
       0.446
Swoo_2476
TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: shm:Shewmr7_2006 DsrH family protein.
       0.446
Swoo_2055
PFAM: protein of unknown function DUF480; KEGG: sse:Ssed_2611 hypothetical protein; Belongs to the UPF0502 family.
   
    0.437
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.