STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2476TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: shm:Shewmr7_2006 DsrH family protein. (93 aa)    
Predicted Functional Partners:
Swoo_2475
TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: sse:Ssed_2134 DsrE family protein; Belongs to the DsrF/TusC family.
 
 0.999
Swoo_2474
TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: sse:Ssed_2135 DsrE family protein.
 
 0.998
Swoo_2477
Sulfur relay protein, TusE/DsrC/DsvC family; Part of a sulfur-relay system.
 
 
 0.954
Swoo_1873
PFAM: glycosyl transferase family 3; KEGG: sse:Ssed_2767 glycosyl transferase, family 3.
  
    0.509
sprT
PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: sse:Ssed_3970 protein of unknown function DUF335, SprT; Belongs to the SprT family.
  
     0.507
Swoo_1205
KEGG: sse:Ssed_1097 hypothetical protein.
  
    0.468
Swoo_2414
KEGG: sse:Ssed_2222 hypothetical protein.
  
     0.465
Swoo_2473
PFAM: protein of unknown function UPF0005; KEGG: sse:Ssed_2136 protein of unknown function UPF0005; Belongs to the BI1 family.
       0.446
Swoo_4829
KEGG: sse:Ssed_4436 hypothetical protein.
  
     0.440
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
     0.432
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.