Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2476TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: shm:Shewmr7_2006 DsrH family protein. (93 aa)    
Predicted Functional Partners:
Swoo_2474
TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: sse:Ssed_2135 DsrE family protein.
 
 0.999
Swoo_2475
TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: sse:Ssed_2134 DsrE family protein; Belongs to the DsrF/TusC family.
 
 0.999
Swoo_2477
Sulfur relay protein, TusE/DsrC/DsvC family; Part of a sulfur-relay system.
 
 
 0.968
Swoo_1873
PFAM: glycosyl transferase family 3; KEGG: sse:Ssed_2767 glycosyl transferase, family 3.
  
    0.611
iscS
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
     
 0.522
Swoo_2473
PFAM: protein of unknown function UPF0005; KEGG: sse:Ssed_2136 protein of unknown function UPF0005; Belongs to the BI1 family.
       0.513
sprT
PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: sse:Ssed_3970 protein of unknown function DUF335, SprT; Belongs to the SprT family.
  
     0.507
Swoo_1205
KEGG: sse:Ssed_1097 hypothetical protein.
  
    0.471
Swoo_2414
KEGG: sse:Ssed_2222 hypothetical protein.
  
     0.465
Swoo_4829
KEGG: sse:Ssed_4436 hypothetical protein.
  
     0.440
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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