Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2477Sulfur relay protein, TusE/DsrC/DsvC family; Part of a sulfur-relay system. (115 aa)    
Predicted Functional Partners:
Swoo_2474
TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: sse:Ssed_2135 DsrE family protein.
 
 
 0.996
Swoo_2475
TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: sse:Ssed_2134 DsrE family protein; Belongs to the DsrF/TusC family.
 
  
 0.977
Swoo_2476
TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: shm:Shewmr7_2006 DsrH family protein.
 
 
 0.968
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.959
Swoo_2473
PFAM: protein of unknown function UPF0005; KEGG: sse:Ssed_2136 protein of unknown function UPF0005; Belongs to the BI1 family.
     
 0.601
Swoo_1873
PFAM: glycosyl transferase family 3; KEGG: sse:Ssed_2767 glycosyl transferase, family 3.
  
    0.597
tusA
SirA family protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
  
   
 0.475
ttcA
PP-loop domain protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
     
 0.406
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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